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The Communiqué News

Quebec [Canada], December 8: Analysis and studying of the different dimensions of a flower has just gotten easier.


Swati Bhat

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A research team in biology from the Universite de Montreal, the Montreal Botanical Garden, and McGill University has successfully used photogrammetry to quickly and accurately build a model of a flower from two-dimensional images and transform it into 3D. This is done in order to have greater clarity about the evolution of flowers.

Photogrammetry is commonly used by geographers to reconstruct the topography of a landscape.

However, this is the first time that scientists have used the technique to design 3D models of flowers in order to better study them. They results of their experiment were published in October in the journal New Phytologist. Photogrammetry is an approach based on information gathered from numerous photos taken from all angles. Thanks to the triangulation of common points present on the photos, it is possible to reconstruct a 3D model - in this case, of a flower. Colours can then be applied to the 3D flower using information from the photos. Flowers are complex and extremely varied three-dimensional structures. Characterizing their forms is important in order to understand their development, functioning and evolution. Indeed, 91 percent of flowering plants interact with pollinators to ensure their reproduction in a 3D environment. The morphology and colours of the flowers act like magnets on pollinators in order to attract them. Yet the 3D structure of flowers is rarely studied. The use of photogrammetry has real advantages compared to other existing methods, in particular X-ray microtomography, which is by far the most widely used method to build 3D flower models. "Photogrammetry is much more accessible, since it's cheap, requires little specialized equipment and can even be used directly in nature," said Marion Lemenager, a doctoral student in biological sciences at UdeM and lead author of the study. "In addition, photogrammetry has the advantage of reproducing the colours of flowers, which is not possible with methods using X-rays." It was Daniel Schoen, a McGill biology professor, who first had the idea of applying photogrammetry to flowers, while doing research at Institut de recherche en biologie vegetale.

The first results, although imperfect, were enough to convince Lemenager to devote a chapter of her thesis to it. "The method is not perfect," she said. "Some parts of the flowers remain difficult to reconstruct in 3D, such as reflective, translucent or very hairy surfaces."

"That said," added UdeM biology professor Simon Joly, "thanks to the living collections of the Montreal Botanical Garden, the study of plants of the Gesneriaceae family - plants originating from subtropical to tropical regions, of which the African violet is one of the best known representatives - demonstrates that 3D models produced using this technique make it possible to explore a large number of questions on the evolution of the shape and colour of flowers. "We have also shown that photogrammetry works at least as well as X-ray methods for visible flower structures," said Joly, who conducts research at the Botanical Garden. Photogrammetry has the potential to boost research on flower evolution and ecology by providing a simple way to access three-dimensional morphological data, the researchers believe. Databases of flowers - or even of complete plants - could give scientists and the general public a way to see the unique features of plant species that for now remain hidden. An open-access, detailed protocol has been made available to promote the use of this method in the context of the comparative study of floral morphology.

The goal of free access to natural science collections of this sort is to help stimulate the study of the evolution of flower morphology at large taxonomic, temporal and geographical scales. It is also possible to admire flower models from every angle thanks to a 3D model viewer.



Augusta (Georgia) [US], May 08: According to a new study by Georgetown University Medical Center, the rising temperature of Earth due to massive climate change will lead to the forcible relocation of wild animals towards the region with the large human population. This change can drastically increase the risk of a viral jump to humans that could lead to the rise of the next pandemic.


Swati Bhat

ree

Representative Image


This link between climate change and viral transmission is described by an international research team led by scientists at Georgetown University and is published on April 28 in Nature. In their study, the scientists conducted the first comprehensive assessment of how climate change will restructure the global mammalian virome. The work focuses on geographic range shifts -- the journeys that species will undertake as they follow their habitats into new areas. As they encounter other mammals for the first time, the study projects they will share thousands of viruses.

They say these shifts bring greater opportunities for viruses like Ebola or coronaviruses to emerge in new areas, making them harder to track, and into new types of animals, making it easier for viruses to jump across a "stepping stone" species into humans. "The closest analogy is the risks we see in the wildlife trade," says the study's lead author Colin Carlson, PhD, an assistant research professor at the Center for Global Health Science and Security at Georgetown University Medical Center. "We worry about markets because bringing unhealthy animals together in unnatural combinations creates opportunities for this stepwise process of emergence -- like how SARS jumped from bats to civets, then civets to people. But markets aren't special anymore; in a changing climate, that kind of process will be the reality in nature just about everywhere." Of concern is that animal habitats will move disproportionately in the same places as human settlements, creating new hotspots of spillover risk.

Much of this process may already be underway in today's 1.2 degrees warmer world, and efforts to reduce greenhouse gas emissions may not stop these events from unfolding. An additional important finding is an impact rising temperatures will have on bats, which account for the majority of novel viral sharing. Their ability to fly will allow them to travel long distances, and share the most viruses. Because of their central role in viral emergence, the greatest impacts are projected in southeast Asia, a global hotspot of bat diversity. "At every step," said Carlson, "our simulations have taken us by surprise. We've spent years double-checking those results, with different data and different assumptions, but the models always lead us to these conclusions. It's a stunning example of just how well we can predict the future if we try." As viruses start to jump between host species at unprecedented rates, the authors say that the impacts on conservation and human health could be stunning. "This mechanism adds yet another layer to how climate change will threaten human and animal health," says the study's co-lead author Gregory Albery, PhD, a postdoctoral fellow in the Department of Biology at the Georgetown University College of Arts and Sciences. "It's unclear exactly how these new viruses might affect the species involved, but many of them will likely translate to new conservation risks and fuel the emergence of novel outbreaks in humans." Altogether, the study suggests that climate change will become the biggest upstream risk factor for disease emergence -- exceeding higher-profile issues like deforestation, wildlife trade, and industrial agriculture.

The authors say the solution is to pair wildlife disease surveillance with real-time studies of environmental change. "When a Brazilian free-tailed bat makes it to Appalachia, we should be invested in knowing what viruses are tagging along," says Carlson. "Trying to spot these host jumps in real-time is the only way we'll be able to prevent this process from leading to more spillovers and more pandemics." "We're closer to predicting and preventing the next pandemic than ever," says Carlson. "This is a big step towards prediction -- now we have to start working on the harder half of the problem." "The COVID-19 pandemic, and the previous spread of SARS, Ebola, and Zika, show how a virus jumping from animals to humans can have massive effects. To predict their jump to humans, we need to know about their spread among other animals," said Sam Scheiner, a program director with the U.S. National Science Foundation (NSF), which funded the research. "This research shows how animal movements and interactions due to a warming climate might increase the number of viruses jumping between species." Additional study authors also included collaborators from the University of Connecticut (Cory Merow), Pacific Lutheran University (Evan Eskew), the University of Cape Town (Christopher Trisos), and the Eco Health Alliance (Noam Ross, Kevin Olival).

The authors report having no personal financial interests related to the study. The research described is supported in part by a National Science Foundation (NSF) Biology Integration Institutes (BII) grant (BII 2021909), to the Viral Emergence Research Initiative (Verena). Verena, co-founded by Carlson and Albery, curates the largest ecosystem of open data in viral ecology and builds tools to help predict which viruses could infect humans, which animals host them, and where they could someday emerge.

NSF BII grants support diverse and collaborative teams of researchers investigating questions that span multiple disciplines within and beyond biology. Addition funding was provided by the NSF grant DBI-1639145, the USAID Emerging Pandemic Threats PREDICT program, the Institute de Valorisation des Donnees, the National Socio-environmental Synthesis Center, and the Georgetown Environment Initiative.


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